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CHROMOSOME 9 RT-PCR SUBMITTED GENES SUMMARY
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
| 9D2 |
TS.chr9.9.007 |
8827453 - 8833657 REV |
318bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 9F1 |
TS.chr9.12.002 |
11090513 - 11150493 FWD |
357bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 4H4 |
TS.chr9.16.016 |
15700998 - 15719922 FWD |
1422bp / 10 |
6 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 6F3 |
SGP.chr9_259 |
21125454 - 21139079 REV |
180bp / 3 |
1 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
1 |
| 4H5 |
TS.chr9.25.017 |
24813499 - 24820235 REV |
489bp / 3 |
2 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
| 2A1 |
SGP.chr9_398 |
27545386 - 27583766 REV |
318bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 9H5 |
SGP.chr9_452 |
29709564 - 29717306 FWD |
387bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11C5 |
SGP.chr9_476 |
30360789 - 30386894 REV |
474bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
| 6F4 |
SGP.chr9_482 |
30598792 - 30611845 FWD |
378bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 4H6 |
TS.chr9.36.021 |
35624175 - 35633960 REV |
2727bp / 13 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 6F5 |
SGP.chr9_759 |
41079823 - 41095663 FWD |
942bp / 4 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
| 12F5 |
TS.chr9.45.017 |
44498262 - 44503398 FWD |
546bp / 5 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
0 |
| 9A6 |
SGP.chr9_944 |
47637392 - 47656407 REV |
444bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
| 7C1 |
SGP.chr9_963 |
47962353 - 47965942 FWD |
297bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8E5 |
SGP.chr9_1006 |
49011579 - 49019958 FWD |
366bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 9G1 |
TS.chr9.57.024 |
56686665 - 56689186 FWD |
387bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
0 |
| 6F1 |
SGP.chr9_1149 |
56750030 - 56794692 REV |
4062bp / 5 |
4 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 5A1 |
TS.chr9.58.018 |
57758932 - 57777169 FWD |
882bp / 9 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 1H4 |
SGP.chr9_1245 |
60916966 - 60996613 REV |
993bp / 5 |
3 |
1 |
1 |
0 |
1 |
0 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 5A2 |
TS.chr9.67.001 |
66000557 - 66001891 REV |
183bp / 2 |
1 |
0 |
0 |
1 |
0 |
1 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 6F2 |
SGP.chr9_1421 |
69793803 - 69798340 FWD |
486bp / 4 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8E6 |
SGP.chr9_1425 |
69882916 - 69884581 REV |
396bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 9G5 |
SGP.chr9_1657 |
84252886 - 84279027 REV |
330bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 1H5 |
SGP.chr9_1744 |
90083042 - 90095445 REV |
2754bp / 3 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 5A3 |
TS.chr9.96.002 |
95035960 - 95040280 REV |
576bp / 2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 9H1 |
TS.chr9.98.009 |
97274660 - 97279667 FWD |
330bp / 2 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
| 4H3 |
TS.chr9.102.001 |
101005878 - 101016852 REV |
390bp / 3 |
2 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 1H6 |
SGP.chr9_2204 |
115696317 - 115746428 REV |
2031bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
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TABLE COLUMNS DESCRIPTION
Here we describe what does contain each column in the previous table:
- Geneva identifier: corresponds to an alphanumeric code for each single gene set of experiments.
- Predicted gene identifier: the name of the given gene prediction as provided by the software. Both, this column and the previous one, are linked to a single browser page for each gene prediction that contains further information about it.
- Gene location: the forward coordinates along the chromosome and the corresponding gene strand.
- Length of the transcript and the number of exons.
- The selected intron number.
- Results on tissues: RT-PCR success on each of the mouse tissues tested in this experiment ("green" color meaning success and "red" color for failure). The tissues were: brain (BR), heart (HE), kidney (KI), thymus (TH), liver (LI), stomach (ST), muscle (MU), lung (LU), testis (TE), skin (SK), eye (EY) and ovary (OV).
- Three extra columns summarizing RT-PCR results:
- SEQ CNF :
RT-PCR succeeded and the sequence of the predicted gene was confirmed.
- SEQ WRG :
the PCR product that was sequenced does not correspond to the predicted one (unspecific amplification).
- DIF SPL :
the RT-PCR determined a different splice site (i.e. an extra exon within the submitted intron).
Real Positive Genes are those, and only those, having "1" in the "SEQ CNF" column.
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UPF
