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CHROMOSOME 7 RT-PCR SUBMITTED GENES SUMMARY
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
| 6D6 |
SGP.chr7_420 |
17509567 - 17515399 REV |
2046bp / 7 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 4F6 |
TS.chr7.20.015 |
19430942 - 19436819 FWD |
786bp / 5 |
4 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
| 4G1 |
TS.chr7.22.018 |
21269574 - 21393904 REV |
14445bp / 106 |
24 |
1 |
0 |
0 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 6E1 |
SGP.chr7_670 |
23249814 - 23262050 FWD |
1590bp / 3 |
2 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 11A5 |
SGP.chr7_751 |
26838525 - 26840910 REV |
351bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 9A1 |
TS.chr7.30.017 |
29751950 - 29756057 FWD |
330bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
| 9D5 |
SGP.chr7_960 |
33519496 - 33521777 FWD |
387bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
| 6D1 |
SGP.chr7_1100 |
36009144 - 36017564 FWD |
411bp / 3 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
1 |
| 4G2 |
TS.chr7.45.007 |
44675709 - 44701943 FWD |
390bp / 4 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 1G3 |
SGP.chr7_1222 |
44693929 - 44726419 FWD |
384bp / 5 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 4G3 |
TS.chr7.46.010 |
45683921 - 45705636 REV |
1023bp / 6 |
5 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 12D5 |
TS.chr7.55.016 |
54896190 - 54937568 REV |
579bp / 4 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 9B5 |
SGP.chr7_1396 |
59689465 - 59701761 FWD |
477bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 6D2 |
SGP.chr7_1405 |
59802647 - 59815928 FWD |
585bp / 6 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11H4 |
SGP.chr7_1411 |
59935920 - 60030920 FWD |
1077bp / 10 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 7B5 |
SGP.chr7_1417 |
60232822 - 60248219 REV |
300bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 1G4 |
SGP.chr7_1518 |
66177291 - 66249772 FWD |
777bp / 6 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
| 4G4 |
TS.chr7.67.004 |
66198695 - 66249121 FWD |
372bp / 4 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
| 6D3 |
SGP.chr7_1520 |
66322513 - 66368375 FWD |
312bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
| 9B1 |
TS.chr7.70.004 |
69169327 - 69184591 FWD |
1566bp / 13 |
10 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 6D4 |
SGP.chr7_2447 |
109718411 - 109735166 REV |
1827bp / 11 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
0 |
| 8B1 |
TS.chr7.111.008 |
110260459 - 110265918 FWD |
435bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
1 |
| 1G5 |
SGP.chr7_2543 |
115731424 - 115935167 REV |
1053bp / 9 |
6 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 4F4 |
TS.chr7.116.015 |
115742710 - 115777008 REV |
441bp / 4 |
2 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 9C5 |
SGP.chr7_2624 |
117580646 - 117584606 REV |
495bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 4F5 |
TS.chr7.122.009 |
121347927 - 121362847 FWD |
945bp / 6 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 6D5 |
SGP.chr7_2789 |
124891797 - 124926340 REV |
1467bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 1G6 |
SGP.chr7_2799 |
125526414 - 125541074 REV |
681bp / 3 |
2 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
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TABLE COLUMNS DESCRIPTION
Here we describe what does contain each column in the previous table:
- Geneva identifier: corresponds to an alphanumeric code for each single gene set of experiments.
- Predicted gene identifier: the name of the given gene prediction as provided by the software. Both, this column and the previous one, are linked to a single browser page for each gene prediction that contains further information about it.
- Gene location: the forward coordinates along the chromosome and the corresponding gene strand.
- Length of the transcript and the number of exons.
- The selected intron number.
- Results on tissues: RT-PCR success on each of the mouse tissues tested in this experiment ("green" color meaning success and "red" color for failure). The tissues were: brain (BR), heart (HE), kidney (KI), thymus (TH), liver (LI), stomach (ST), muscle (MU), lung (LU), testis (TE), skin (SK), eye (EY) and ovary (OV).
- Three extra columns summarizing RT-PCR results:
- SEQ CNF :
RT-PCR succeeded and the sequence of the predicted gene was confirmed.
- SEQ WRG :
the PCR product that was sequenced does not correspond to the predicted one (unspecific amplification).
- DIF SPL :
the RT-PCR determined a different splice site (i.e. an extra exon within the submitted intron).
Real Positive Genes are those, and only those, having "1" in the "SEQ CNF" column.
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UPF
