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CHROMOSOME 14 RT-PCR SUBMITTED GENES SUMMARY
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
| 5E1 |
SGP.chr14_59 |
9159738 - 9198978 REV |
1086bp / 7 |
5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 5D5 |
SGP.chr14_196 |
17275836 - 17279495 FWD |
534bp / 4 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 6G5 |
SGP.chr14_202 |
17362319 - 17378926 FWD |
510bp / 5 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12F3 |
TS.chr14.21.008 |
20652536 - 20674151 FWD |
558bp / 5 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
| 3F4 |
TS.chr14.22.003 |
21042025 - 21046244 FWD |
921bp / 5 |
2 |
0 |
0 |
1 |
0 |
1 |
1 |
0 |
0 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 11E3 |
SGP.chr14_356 |
23831504 - 23882324 FWD |
471bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 3F5 |
TS.chr14.28.025 |
27768263 - 27772495 REV |
2742bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8G6 |
SGP.chr14_438 |
28019117 - 28049641 FWD |
303bp / 4 |
3 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 3F6 |
TS.chr14.29.012 |
28248865 - 28274342 REV |
1935bp / 11 |
7 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
0 |
| 5D6 |
SGP.chr14_446 |
28328504 - 28422207 FWD |
486bp / 5 |
3 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 7E5 |
TS.chr14.32.006 |
31794790 - 31806629 FWD |
786bp / 3 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
1 |
0 |
| 1B5 |
SGP.chr14_540 |
37032329 - 37092856 FWD |
1155bp / 6 |
3 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
| 3G1 |
TS.chr14.51.020 |
50728121 - 50732239 FWD |
885bp / 2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 11D2 |
SGP.chr14_945 |
53556069 - 53573504 REV |
957bp / 4 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 3G2 |
TS.chr14.54.012 |
53556072 - 53573504 REV |
954bp / 4 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 12A1 |
TS.chr14.57.017 |
56727246 - 56746443 FWD |
585bp / 5 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
| 12B1 |
TS.chr14.57.018 |
56748961 - 56756043 FWD |
516bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
| 8G4 |
SGP.chr14_1123 |
62531331 - 62545561 FWD |
348bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5D2 |
SGP.chr14_1137 |
63332045 - 63461446 REV |
2664bp / 16 |
4 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
| 12G3 |
TS.chr14.64.006 |
63391874 - 63426843 REV |
2202bp / 16 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 3G3 |
TS.chr14.68.014 |
67967035 - 67972857 REV |
1290bp / 5 |
4 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 7E6 |
TS.chr14.69.014 |
68615847 - 68617349 REV |
318bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5D3 |
SGP.chr14_1517 |
91891145 - 92019403 REV |
804bp / 5 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11C2 |
SGP.chr14_1552 |
94857944 - 94865046 FWD |
327bp / 4 |
2 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 11F5 |
SGP.chr14_1575 |
95733195 - 95822172 FWD |
639bp / 5 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5D4 |
SGP.chr14_1582 |
95993876 - 96021849 REV |
342bp / 3 |
2 |
0 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
| 8G5 |
SGP.chr14_1586 |
96243186 - 96249086 REV |
405bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
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TABLE COLUMNS DESCRIPTION
Here we describe what does contain each column in the previous table:
- Geneva identifier: corresponds to an alphanumeric code for each single gene set of experiments.
- Predicted gene identifier: the name of the given gene prediction as provided by the software. Both, this column and the previous one, are linked to a single browser page for each gene prediction that contains further information about it.
- Gene location: the forward coordinates along the chromosome and the corresponding gene strand.
- Length of the transcript and the number of exons.
- The selected intron number.
- Results on tissues: RT-PCR success on each of the mouse tissues tested in this experiment ("green" color meaning success and "red" color for failure). The tissues were: brain (BR), heart (HE), kidney (KI), thymus (TH), liver (LI), stomach (ST), muscle (MU), lung (LU), testis (TE), skin (SK), eye (EY) and ovary (OV).
- Three extra columns summarizing RT-PCR results:
- SEQ CNF :
RT-PCR succeeded and the sequence of the predicted gene was confirmed.
- SEQ WRG :
the PCR product that was sequenced does not correspond to the predicted one (unspecific amplification).
- DIF SPL :
the RT-PCR determined a different splice site (i.e. an extra exon within the submitted intron).
Real Positive Genes are those, and only those, having "1" in the "SEQ CNF" column.
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UPF
