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CHROMOSOME 12 RT-PCR SUBMITTED GENES SUMMARY
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
| 8F6 |
SGP.chr12_38 |
5108641 - 5116052 FWD |
372bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
| 8G1 |
SGP.chr12_88 |
7504819 - 7522392 FWD |
309bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12D3 |
TS.chr12.14.010 |
13530624 - 13547716 FWD |
474bp / 6 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 7D6 |
TS.chr12.23.016 |
22824044 - 22834524 REV |
1602bp / 4 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
| 11E5 |
SGP.chr12_339 |
24683366 - 24688035 FWD |
366bp / 4 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
| 3E2 |
TS.chr12.25.022 |
24983095 - 24988405 FWD |
570bp / 5 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
1 |
0 |
1 |
0 |
0 |
| 8B4 |
SGP.chr12_411 |
28163527 - 28187539 FWD |
624bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5C2 |
SGP.chr12_461 |
31337012 - 31392012 FWD |
540bp / 5 |
3 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
| 3E3 |
TS.chr12.60.005 |
59465830 - 59469364 FWD |
930bp / 4 |
2 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 11G6 |
TS.chr12.62.005 |
61267202 - 61279006 REV |
345bp / 4 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 11C3 |
SGP.chr12_884 |
63348076 - 63449384 FWD |
741bp / 5 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11H1 |
SGP.chr12_916 |
64789499 - 64812460 FWD |
867bp / 10 |
7 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
| 5C3 |
SGP.chr12_935 |
65950020 - 65952880 FWD |
483bp / 2 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 1A6 |
SGP.chr12_1011 |
70604342 - 70783761 FWD |
16110bp / 79 |
15 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 3E4 |
TS.chr12.78.016 |
77902789 - 77915054 REV |
315bp / 4 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 11B3 |
SGP.chr12_1174 |
79222471 - 79229095 REV |
348bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11F1 |
SGP.chr12_1231 |
80933105 - 80945626 REV |
366bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 3E5 |
TS.chr12.82.017 |
81691223 - 81696515 REV |
789bp / 2 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 7E1 |
TS.chr12.83.001 |
82000755 - 82013663 REV |
484bp / 4 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
| 8F5 |
SGP.chr12_1317 |
83917122 - 83934118 FWD |
315bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
| 5B6 |
SGP.chr12_1338 |
85195259 - 85220354 REV |
183bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 3E1 |
TS.chr12.100.010 |
99712031 - 99713696 FWD |
276bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
| 8B3 |
SGP.chr12_1571 |
100211068 - 100251913 REV |
900bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 6G4 |
SGP.chr12_1597 |
101347912 - 101357559 FWD |
252bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11G1 |
SGP.chr12_1610 |
101828496 - 101892226 FWD |
543bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5C1 |
SGP.chr12_1717 |
106740030 - 106788440 REV |
624bp / 5 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 1B1 |
SGP.chr12_1918 |
114229389 - 114238321 FWD |
428bp / 4 |
2 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
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TABLE COLUMNS DESCRIPTION
Here we describe what does contain each column in the previous table:
- Geneva identifier: corresponds to an alphanumeric code for each single gene set of experiments.
- Predicted gene identifier: the name of the given gene prediction as provided by the software. Both, this column and the previous one, are linked to a single browser page for each gene prediction that contains further information about it.
- Gene location: the forward coordinates along the chromosome and the corresponding gene strand.
- Length of the transcript and the number of exons.
- The selected intron number.
- Results on tissues: RT-PCR success on each of the mouse tissues tested in this experiment ("green" color meaning success and "red" color for failure). The tissues were: brain (BR), heart (HE), kidney (KI), thymus (TH), liver (LI), stomach (ST), muscle (MU), lung (LU), testis (TE), skin (SK), eye (EY) and ovary (OV).
- Three extra columns summarizing RT-PCR results:
- SEQ CNF :
RT-PCR succeeded and the sequence of the predicted gene was confirmed.
- SEQ WRG :
the PCR product that was sequenced does not correspond to the predicted one (unspecific amplification).
- DIF SPL :
the RT-PCR determined a different splice site (i.e. an extra exon within the submitted intron).
Real Positive Genes are those, and only those, having "1" in the "SEQ CNF" column.
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UPF
