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CHROMOSOME 11 RT-PCR SUBMITTED GENES SUMMARY
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
| 11E1 |
SGP.chr11_3 |
3024135 - 3054414 REV |
648bp / 6 |
3 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
| 3D1 |
TS.chr11.5.001 |
4002644 - 4010571 REV |
1943bp / 9 |
7 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 5B4 |
SGP.chr11_42 |
4003116 - 4010571 REV |
1596bp / 7 |
6 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 11B1 |
SGP.chr11_134 |
8731608 - 8783076 REV |
2088bp / 13 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 3C6 |
TS.chr11.17.004 |
16238341 - 16245289 FWD |
1254bp / 8 |
6 |
1 |
0 |
1 |
1 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
1 |
| 11A3 |
SGP.chr11_225 |
18178362 - 18189962 REV |
480bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8B2 |
SGP.chr11_230 |
18370744 - 18380681 REV |
717bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
| 5B3 |
SGP.chr11_305 |
21660855 - 21685943 FWD |
363bp / 5 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
| 9A2 |
TS.chr11.33.026 |
32707103 - 32708999 REV |
843bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 7D4 |
TS.chr11.37.003 |
36028889 - 36034224 REV |
387bp / 5 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
0 |
| 8F4 |
SGP.chr11_590 |
37423588 - 37437201 REV |
438bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
| 5B5 |
SGP.chr11_669 |
43492028 - 43493835 FWD |
474bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
0 |
0 |
1 |
0 |
0 |
| 3D2 |
TS.chr11.61.011 |
60321561 - 60324215 REV |
663bp / 2 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 1A3 |
SGP.chr11_1123 |
63045210 - 63087796 REV |
960bp / 4 |
1 |
0 |
1 |
0 |
0 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 3D3 |
TS.chr11.64.002 |
63045213 - 63062545 REV |
744bp / 4 |
2 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 5B1 |
SGP.chr11_1408 |
72992347 - 73001326 REV |
399bp / 3 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 11F6 |
TS.chr11.74.031 |
73871134 - 73893672 FWD |
1776bp / 13 |
7 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
| 3D4 |
TS.chr11.76.006 |
75245900 - 75254491 FWD |
495bp / 4 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12C3 |
TS.chr11.76.021 |
75652451 - 75659923 FWD |
402bp / 4 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
| 11C1 |
SGP.chr11_1528 |
76057018 - 76069682 REV |
5472bp / 11 |
10 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 5B2 |
SGP.chr11_1725 |
83919697 - 83925693 REV |
1629bp / 3 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
0 |
| 12A6 |
TS.chr11.85.028 |
84674090 - 84681917 FWD |
870bp / 6 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 7D5 |
TS.chr11.86.023 |
85735307 - 85753480 REV |
531bp / 4 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8F2 |
SGP.chr11_1797 |
86309272 - 86327895 FWD |
441bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 3D5 |
TS.chr11.89.009 |
88295721 - 88301668 FWD |
612bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 3D6 |
TS.chr11.91.015 |
90939340 - 90947083 FWD |
402bp / 2 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
| 1A4 |
SGP.chr11_2120 |
98623186 - 98648467 REV |
1278bp / 9 |
5 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 11D1 |
SGP.chr11_2496 |
109246881 - 109419351 FWD |
2091bp / 18 |
10 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 8F3 |
SGP.chr11_2583 |
113240184 - 113256802 REV |
417bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 7D3 |
TS.chr11.115.008 |
114333352 - 114341829 FWD |
474bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11E6 |
TS.chr11.116.013 |
115838471 - 115842257 REV |
435bp / 4 |
1 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
1 |
0 |
0 |
| 12B3 |
TS.chr11.117.011 |
116171599 - 116185566 REV |
1026bp / 6 |
2 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
| 3C5 |
TS.chr11.119.027 |
118770605 - 118774209 FWD |
633bp / 4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 1A5 |
SGP.chr11_2849 |
122560468 - 122613935 REV |
861bp / 10 |
9 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
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TABLE COLUMNS DESCRIPTION
Here we describe what does contain each column in the previous table:
- Geneva identifier: corresponds to an alphanumeric code for each single gene set of experiments.
- Predicted gene identifier: the name of the given gene prediction as provided by the software. Both, this column and the previous one, are linked to a single browser page for each gene prediction that contains further information about it.
- Gene location: the forward coordinates along the chromosome and the corresponding gene strand.
- Length of the transcript and the number of exons.
- The selected intron number.
- Results on tissues: RT-PCR success on each of the mouse tissues tested in this experiment ("green" color meaning success and "red" color for failure). The tissues were: brain (BR), heart (HE), kidney (KI), thymus (TH), liver (LI), stomach (ST), muscle (MU), lung (LU), testis (TE), skin (SK), eye (EY) and ovary (OV).
- Three extra columns summarizing RT-PCR results:
- SEQ CNF :
RT-PCR succeeded and the sequence of the predicted gene was confirmed.
- SEQ WRG :
the PCR product that was sequenced does not correspond to the predicted one (unspecific amplification).
- DIF SPL :
the RT-PCR determined a different splice site (i.e. an extra exon within the submitted intron).
Real Positive Genes are those, and only those, having "1" in the "SEQ CNF" column.
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UPF
