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CHROMOSOME 10 RT-PCR SUBMITTED GENES SUMMARY
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
| 1A1 |
SGP.chr10_27 |
4935525 - 5206576 REV |
18849bp / 98 |
11 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 12H2 |
TS.chr10.10.013 |
9736293 - 9737890 REV |
321bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
| 3B5 |
TS.chr10.15.005 |
14358694 - 14360684 REV |
984bp / 3 |
2 |
1 |
1 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
| 7D1 |
TS.chr10.30.009 |
29329410 - 29331747 REV |
387bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 3B6 |
TS.chr10.31.004 |
30169428 - 30172705 REV |
258bp / 3 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 5A6 |
SGP.chr10_376 |
30875302 - 31000710 REV |
756bp / 9 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 11A1 |
SGP.chr10_406 |
34056523 - 34090538 FWD |
447bp / 4 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
| 1A2 |
SGP.chr10_503 |
41578596 - 41591323 FWD |
519bp / 6 |
3 |
0 |
0 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 11D6 |
TS.chr10.42.022 |
41755268 - 41776052 REV |
1023bp / 9 |
5 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
0 |
0 |
| 3C1 |
TS.chr10.44.007 |
43246889 - 43250340 REV |
345bp / 3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12D6 |
TS.chr10.45.020 |
44577543 - 44632081 FWD |
825bp / 5 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 8F1 |
SGP.chr10_589 |
46312335 - 46357866 FWD |
342bp / 3 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12A3 |
TS.chr10.49.006 |
48973463 - 48977720 FWD |
744bp / 4 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 7D2 |
TS.chr10.72.012 |
71463852 - 71469963 FWD |
381bp / 2 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
| 3C2 |
TS.chr10.76.002 |
75027313 - 75031457 FWD |
1497bp / 5 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
| 3C3 |
TS.chr10.87.016 |
86885142 - 86903656 FWD |
1620bp / 6 |
4 |
0 |
0 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
| 5A5 |
SGP.chr10_1403 |
92476790 - 92479614 REV |
225bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 3C4 |
TS.chr10.94.005 |
93205591 - 93212978 REV |
624bp / 4 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
0 |
| 3B4 |
TS.chr10.108.019 |
107892623 - 107924002 REV |
2196bp / 16 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| 12H5 |
TS.chr10.118.019 |
117598175 - 117605235 REV |
606bp / 6 |
3 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
| 7C6 |
TS.chr10.119.010 |
118823297 - 118826976 REV |
402bp / 2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GENEVA
CODE |
GENE
ID |
GENE
LOCATION |
CDS LEN
/ #EXONS |
RTPCR
INTRON |
BR |
HE |
KI |
TH |
LI |
ST |
MU |
LU |
TE |
SK |
EY |
OV |
SEQ
CNF |
SEQ
WRG |
DIF
SPL |
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TABLE COLUMNS DESCRIPTION
Here we describe what does contain each column in the previous table:
- Geneva identifier: corresponds to an alphanumeric code for each single gene set of experiments.
- Predicted gene identifier: the name of the given gene prediction as provided by the software. Both, this column and the previous one, are linked to a single browser page for each gene prediction that contains further information about it.
- Gene location: the forward coordinates along the chromosome and the corresponding gene strand.
- Length of the transcript and the number of exons.
- The selected intron number.
- Results on tissues: RT-PCR success on each of the mouse tissues tested in this experiment ("green" color meaning success and "red" color for failure). The tissues were: brain (BR), heart (HE), kidney (KI), thymus (TH), liver (LI), stomach (ST), muscle (MU), lung (LU), testis (TE), skin (SK), eye (EY) and ovary (OV).
- Three extra columns summarizing RT-PCR results:
- SEQ CNF :
RT-PCR succeeded and the sequence of the predicted gene was confirmed.
- SEQ WRG :
the PCR product that was sequenced does not correspond to the predicted one (unspecific amplification).
- DIF SPL :
the RT-PCR determined a different splice site (i.e. an extra exon within the submitted intron).
Real Positive Genes are those, and only those, having "1" in the "SEQ CNF" column.
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UPF
