# metaM_v1.0 # date Fri Dec 2 15:58:57 2005 # ALPHA = 0.500000 # LAMBDA = 0.100000 # MU = 0.100000 # Gap_penalty = -10.000000 ### Maximum similarity: 114.51 ### Best meta-alignment contains 27 elements ### ((Bos,(Canis,(Human,Pan,241.44),181.82),200.14),(Mus,Rattus,174.07),114.51) ### Bos Canis Human Pan Mus Rattus Bos-OUT metaM_v1.0 U 0 0 . . . Canis-OUT metaM_v1.0 U 0 0 . . . Human-OUT metaM_v1.0 U 0 0 . . . Pan-OUT metaM_v1.0 U 0 0 . . . Mus-OUT metaM_v1.0 U 0 0 . . . Rattus-OUT metaM_v1.0 U 0 0 . . . Bos-OUT metaM_v1.0 RUSH1-alfa 24 31 . . . RUSH1-alfa Canis-OUT metaM_v1.0 RUSH1-alfa 8 15 . . . RUSH1-alfa Human-OUT metaM_v1.0 RUSH1-alfa 7 14 . . . RUSH1-alfa Pan-OUT metaM_v1.0 RUSH1-alfa 8 15 . . . RUSH1-alfa Rattus-OUT metaM_v1.0 RUSH1-alfa 7 14 . . . RUSH1-alfa Bos-OUT metaM_v1.0 RUSH1-alfa 98 105 . . . RUSH1-alfa Canis-OUT metaM_v1.0 RUSH1-alfa 64 71 . . . RUSH1-alfa Human-OUT metaM_v1.0 RUSH1-alfa 28 35 . . . RUSH1-alfa Pan-OUT metaM_v1.0 RUSH1-alfa 29 36 . . . RUSH1-alfa Rattus-OUT metaM_v1.0 RUSH1-alfa 40 47 . . . RUSH1-alfa Bos-OUT metaM_v1.0 FREAC-3 110 117 . . . FREAC-3 Canis-OUT metaM_v1.0 FREAC-3 83 90 . . . FREAC-3 Human-OUT metaM_v1.0 FREAC-3 53 60 . . . FREAC-3 Pan-OUT metaM_v1.0 FREAC-3 54 61 . . . FREAC-3 Rattus-OUT metaM_v1.0 FREAC-3 102 109 . . . FREAC-3 Bos-OUT metaM_v1.0 GATA-2 130 134 . . . GATA-2 Canis-OUT metaM_v1.0 GATA-2 119 123 . . . GATA-2 Human-OUT metaM_v1.0 GATA-2 117 121 . . . GATA-2 Pan-OUT metaM_v1.0 GATA-2 118 122 . . . GATA-2 Mus-OUT metaM_v1.0 GATA-2 57 61 . . . GATA-2 Rattus-OUT metaM_v1.0 GATA-2 60 64 . . . GATA-2 Bos-OUT metaM_v1.0 FREAC-4 85 92 . . . FREAC-4 Human-OUT metaM_v1.0 FREAC-4 61 68 . . . FREAC-4 Pan-OUT metaM_v1.0 FREAC-4 62 69 . . . FREAC-4 Rattus-OUT metaM_v1.0 FREAC-4 80 87 . . . FREAC-4 Canis-OUT metaM_v1.0 Yin-Yang 112 117 . . . Yin-Yang Human-OUT metaM_v1.0 Yin-Yang 95 100 . . . Yin-Yang Pan-OUT metaM_v1.0 Yin-Yang 111 116 . . . Yin-Yang Rattus-OUT metaM_v1.0 Yin-Yang 72 77 . . . Yin-Yang Bos-OUT metaM_v1.0 RUSH1-alfa 137 144 . . . RUSH1-alfa Canis-OUT metaM_v1.0 RUSH1-alfa 126 133 . . . RUSH1-alfa Human-OUT metaM_v1.0 RUSH1-alfa 85 92 . . . RUSH1-alfa Pan-OUT metaM_v1.0 RUSH1-alfa 86 93 . . . RUSH1-alfa Rattus-OUT metaM_v1.0 RUSH1-alfa 90 97 . . . RUSH1-alfa Bos-OUT metaM_v1.0 PBF 156 160 . . . PBF Canis-OUT metaM_v1.0 PBF 152 156 . . . PBF Human-OUT metaM_v1.0 PBF 143 147 . . . PBF Pan-OUT metaM_v1.0 PBF 144 148 . . . PBF Mus-OUT metaM_v1.0 PBF 92 96 . . . PBF Bos-OUT metaM_v1.0 FREAC-3 245 252 . . . FREAC-3 Canis-OUT metaM_v1.0 FREAC-3 202 209 . . . FREAC-3 Human-OUT metaM_v1.0 FREAC-3 209 216 . . . FREAC-3 Pan-OUT metaM_v1.0 FREAC-3 209 216 . . . FREAC-3 Mus-OUT metaM_v1.0 FREAC-3 100 107 . . . FREAC-3 Bos-OUT metaM_v1.0 Broad-complex_4 186 196 . . . Broad-complex_4 Canis-OUT metaM_v1.0 Broad-complex_4 188 198 . . . Broad-complex_4 Human-OUT metaM_v1.0 Broad-complex_4 194 204 . . . Broad-complex_4 Pan-OUT metaM_v1.0 Broad-complex_4 194 204 . . . Broad-complex_4 Mus-OUT metaM_v1.0 Broad-complex_4 111 121 . . . Broad-complex_4 Human-OUT metaM_v1.0 Athb-1 125 132 . . . Athb-1 Pan-OUT metaM_v1.0 Athb-1 126 133 . . . Athb-1 Mus-OUT metaM_v1.0 Athb-1 124 131 . . . Athb-1 Rattus-OUT metaM_v1.0 Athb-1 126 133 . . . Athb-1 Bos-OUT metaM_v1.0 Ubx 240 243 . . . Ubx Canis-OUT metaM_v1.0 Ubx 229 232 . . . Ubx Human-OUT metaM_v1.0 Ubx 236 239 . . . Ubx Pan-OUT metaM_v1.0 Ubx 236 239 . . . Ubx Mus-OUT metaM_v1.0 Ubx 132 135 . . . Ubx Rattus-OUT metaM_v1.0 Ubx 134 137 . . . Ubx Bos-OUT metaM_v1.0 FREAC-3 122 129 . . . FREAC-3 Canis-OUT metaM_v1.0 FREAC-3 135 142 . . . FREAC-3 Human-OUT metaM_v1.0 FREAC-3 74 81 . . . FREAC-3 Pan-OUT metaM_v1.0 FREAC-3 75 82 . . . FREAC-3 Mus-OUT metaM_v1.0 FREAC-3 146 153 . . . FREAC-3 Rattus-OUT metaM_v1.0 FREAC-3 148 155 . . . FREAC-3 Bos-OUT metaM_v1.0 Hunchback 146 155 . . . Hunchback Canis-OUT metaM_v1.0 Hunchback 174 183 . . . Hunchback Human-OUT metaM_v1.0 Hunchback 166 175 . . . Hunchback Pan-OUT metaM_v1.0 Hunchback 167 176 . . . Hunchback Mus-OUT metaM_v1.0 Hunchback 162 171 . . . Hunchback Bos-OUT metaM_v1.0 SPI-1 198 203 . . . SPI-1 Canis-OUT metaM_v1.0 SPI-1 211 216 . . . SPI-1 Human-OUT metaM_v1.0 SPI-1 218 223 . . . SPI-1 Pan-OUT metaM_v1.0 SPI-1 218 223 . . . SPI-1 Mus-OUT metaM_v1.0 SPI-1 193 198 . . . SPI-1 Rattus-OUT metaM_v1.0 SPI-1 194 199 . . . SPI-1 Bos-OUT metaM_v1.0 FREAC-7 259 266 . . . FREAC-7 Canis-OUT metaM_v1.0 FREAC-7 234 241 . . . FREAC-7 Human-OUT metaM_v1.0 FREAC-7 241 248 . . . FREAC-7 Pan-OUT metaM_v1.0 FREAC-7 241 248 . . . FREAC-7 Mus-OUT metaM_v1.0 FREAC-7 200 207 . . . FREAC-7 Rattus-OUT metaM_v1.0 FREAC-7 201 208 . . . FREAC-7 Bos-OUT metaM_v1.0 FREAC-3 213 220 . . . FREAC-3 Canis-OUT metaM_v1.0 FREAC-3 218 225 . . . FREAC-3 Human-OUT metaM_v1.0 FREAC-3 225 232 . . . FREAC-3 Pan-OUT metaM_v1.0 FREAC-3 225 232 . . . FREAC-3 Mus-OUT metaM_v1.0 FREAC-3 208 215 . . . FREAC-3 Rattus-OUT metaM_v1.0 FREAC-3 209 216 . . . FREAC-3 Bos-OUT metaM_v1.0 SPI-1 399 404 . . . SPI-1 Canis-OUT metaM_v1.0 SPI-1 402 407 . . . SPI-1 Human-OUT metaM_v1.0 SPI-1 394 399 . . . SPI-1 Pan-OUT metaM_v1.0 SPI-1 394 399 . . . SPI-1 Mus-OUT metaM_v1.0 SPI-1 220 225 . . . SPI-1 Rattus-OUT metaM_v1.0 SPI-1 221 226 . . . SPI-1 Bos-OUT metaM_v1.0 E2F 225 232 . . . E2F Canis-OUT metaM_v1.0 E2F 306 313 . . . E2F Human-OUT metaM_v1.0 E2F 312 319 . . . E2F Pan-OUT metaM_v1.0 E2F 312 319 . . . E2F Mus-OUT metaM_v1.0 E2F 318 325 . . . E2F Rattus-OUT metaM_v1.0 E2F 318 325 . . . E2F Bos-OUT metaM_v1.0 c-ETS 353 358 . . . c-ETS Canis-OUT metaM_v1.0 c-ETS 395 400 . . . c-ETS Human-OUT metaM_v1.0 c-ETS 400 405 . . . c-ETS Pan-OUT metaM_v1.0 c-ETS 400 405 . . . c-ETS Rattus-OUT metaM_v1.0 c-ETS 234 239 . . . c-ETS Bos-OUT metaM_v1.0 FREAC-4 379 386 . . . FREAC-4 Canis-OUT metaM_v1.0 FREAC-4 375 382 . . . FREAC-4 Human-OUT metaM_v1.0 FREAC-4 374 381 . . . FREAC-4 Pan-OUT metaM_v1.0 FREAC-4 374 381 . . . FREAC-4 Mus-OUT metaM_v1.0 FREAC-4 253 260 . . . FREAC-4 Canis-OUT metaM_v1.0 Thing1-E47 253 262 . . . Thing1-E47 Human-OUT metaM_v1.0 Thing1-E47 260 269 . . . Thing1-E47 Pan-OUT metaM_v1.0 Thing1-E47 260 269 . . . Thing1-E47 Mus-OUT metaM_v1.0 Thing1-E47 262 271 . . . Thing1-E47 Rattus-OUT metaM_v1.0 Thing1-E47 263 272 . . . Thing1-E47 Bos-OUT metaM_v1.0 GATA-2 268 272 . . . GATA-2 Canis-OUT metaM_v1.0 GATA-2 288 292 . . . GATA-2 Human-OUT metaM_v1.0 GATA-2 295 299 . . . GATA-2 Pan-OUT metaM_v1.0 GATA-2 295 299 . . . GATA-2 Mus-OUT metaM_v1.0 GATA-2 277 281 . . . GATA-2 Bos-OUT metaM_v1.0 MNB1A 291 295 . . . MNB1A Canis-OUT metaM_v1.0 MNB1A 333 337 . . . MNB1A Human-OUT metaM_v1.0 MNB1A 351 355 . . . MNB1A Pan-OUT metaM_v1.0 MNB1A 351 355 . . . MNB1A Mus-OUT metaM_v1.0 MNB1A 293 297 . . . MNB1A Canis-OUT metaM_v1.0 Hunchback 345 354 . . . Hunchback Mus-OUT metaM_v1.0 Hunchback 354 363 . . . Hunchback Rattus-OUT metaM_v1.0 Hunchback 351 360 . . . Hunchback Bos-OUT metaM_v1.0 c-FOS 426 433 . . . c-FOS Canis-OUT metaM_v1.0 c-FOS 422 429 . . . c-FOS Human-OUT metaM_v1.0 c-FOS 421 428 . . . c-FOS Pan-OUT metaM_v1.0 c-FOS 421 428 . . . c-FOS Rattus-OUT metaM_v1.0 c-FOS 385 392 . . . c-FOS Bos-OUT metaM_v1.0 MZF_1-4 466 471 . . . MZF_1-4 Canis-OUT metaM_v1.0 MZF_1-4 462 467 . . . MZF_1-4 Human-OUT metaM_v1.0 MZF_1-4 477 482 . . . MZF_1-4 Pan-OUT metaM_v1.0 MZF_1-4 477 482 . . . MZF_1-4 Rattus-OUT metaM_v1.0 MZF_1-4 406 411 . . . MZF_1-4