Barcelona BioMed Workshop: Bioinformatics Resource Days
November 26-28, 2007

GENE PREDICTION

Tyler Alioto
Arnaud Kerhornou ,
Genome Bioinformatics Research Laboratory

Center for Genomic Regulation - CRG

Geneid and Building Gene Prediction Workflows

Overview

This session aims to give an overview about the gene prediction software. We will focus on geneid software. Then we will introduce Taverna software in order to build and execute gene prediction workflows.

REFERENCES
Brent and Guigó (2004), Recent advances in gene structure prediction, Current Opinion in Structural Biology 14:264-272 [pdf]
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. R. Durbin, S. Eddy, A. Krogh and G. Mitchinson. Cambridge University Press, 1998.
EGASP'05: ENCODE Genome Annotation Assessment Project
Hull, D. et al. (2006), Taverna: a tool for building and running workflows of services. Nucleic Acids Res. 34:W729-W732 PMID:16845108
Kawas, E. et al. (2006), BioMoby extensions to the Taverna workflow management and enactment software. BMC Bioinformatics 7:523 PMID:17137515
OTHER LINKS
Last modified: 10/22/2007 11:17:59
Contributions by
Enrique Blanco
Sergi Castellano
Genis Parra
Josep F. Abril