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UCSC Genome Browser assembly ID: rproC1
Sequencing/Assembly provider ID: Washington University Genome Sequencing Center (WUGSC)
Assembly date: Dec. 2010
GenBank accession ID: NCBI nucleotide/ACPB00000000.2
NCBI Genome information:
NCBI genome 447 (Rhodnius prolixus)
NCBI Assembly information:
NCBI assembly GCA_000181055.2 (09 December 2010)
NCBI BioProject information: Project 13648
Assembly information:
- Library: shotgun plasmid, bac end reads and 454 reads
- Sequencing technology: ABI 3730; Roche 454
- Genome coverage: 8.1x
- Assembly method: Celera assembler v. 6.0
- Total sequence length: 702,645,054
- Total assembly gap length: 141,170,506
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- Number of scaffolds: 27,872
- Scaffold N50: 847,873
- Scaffold L50: 202
- Number of Contigs: 58,559
- Contig N50: 58,559
- Contig L50: 5,765
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Search the assembly:
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By position or search term: Use the "position or search term"
box to find areas of the genome associated with many different attributes, such
as a specific chromosomal coordinate range; mRNA, EST, or STS marker names; or
keywords from the GenBank description of an mRNA.
More information, including sample
queries.
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By gene name: Type a gene name into the "search term" box,
choose your gene from the drop-down list, then press "submit" to go
directly to the assembly location associated with that gene.
More information.
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By track type: Click the "track search" button
to find Genome Browser tracks that match specific selection criteria.
More information.
Download sequence and annotation data:
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