Track Data Hubs
 

Track data hubs are collections of external tracks that can be imported into the UCSC Genome Browser. Hub tracks show up under the hub's own blue label bar on the main browser page, as well as on the configure page. For more information, see the User's Guide.To import a public hub click its "Connect" button below.

NOTE: Because Track Hubs are created and maintained by external sources, UCSC is not responsible for their content.

Clicking Connect redirects to the gateway page of the selected hub's default assembly.
Display Hub Name Description Assemblies
SDSU NAT ERROR: Couldn't open http://bioinformatics.sdstate.edu/datasets/2012-NAT/hub.txt Debug Help hg19, mm9, rn4
DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data [+] hg19, hg18, mm9, mm10, panTro2, danRer7...
Translation Initiation Sites (TIS) Translation Initiation Sites (TIS) track hg19
ENCODE Analysis Hub ENCODE Integrative Analysis Data Hub hg19
miRcode microRNA sites Predicted microRNA target sites in GENCODE transcripts hg19
Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis hg19
UMassMed ZHub UMassMed H3K4me3 ChIP-seq data for Autistic brains hg19
Cancer genome polyA site & usage An in-depth map of polyadenylation sites in cancer (matched-pair tissues and cell lines) hg19
Blueprint Hub Blueprint Epigenomics Data Hub hg38
CEMT (CEEHRC) Epigenomic Data tracks from BCGSC, Vancouver hg19
454 K562andHelaS3RNAseq Whole-Cell 454 Hela and K562 RNAseq hg19
McGill EMC (CEEHRC) McGill Epigenomics Mapping Centre, Montreal, Quebec, Canada hg19
EcoliCompHub E.coli Comparative Assembly Hub [+] EscherichiaColi042Uid161985, reference...
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
Ultraconserved Elements Ultra conserved Elements in the Human Genome Science 304(5675) pp.1321-1325 (2004) hg19
Broad Improved Canine Annotation v1 Broad Institute CanFam3 Improved Annotation Data v1 canFam3
ThorntonHub ERROR: TCP non-blocking connect() to devlaeminck.bio.uci.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://devlaeminck.bio.uci.edu/RogersUCSC/hub.txt Debug Help Dsim-w501
EcoliCompHubWtDups E.coli Comparative Assembly Hub, With Duplications [+] EscherichiaColi042Uid161985, reference...
Plants CSHL Biology of Genomes meeting 2013 demonstration assembly hub araTha1, braRap1, ricCom1
ZebrafishGenomics Burgess Lab Zebrafish Genomic Resources danRer7
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9
facebase hub ERROR: Couldn't open http://trackhub.facebase.org/hub.txt Debug Help mm9, mm10, hg18, hg19
FANTOM5 CAGE RECLU DATA RIKEN FANTOM5 CAGE clusters by RECLU hg19, hg18
Ensembl Regulatory Build ERROR: Couldn't open http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt Debug Help hg38, hg19
Croc and Bird Hub Croc, Bird, and Archosaur Assembly Hub [+] allMis2, Anc00, Anc01, Anc02, Anc03...
CPTAC Hub v1 CPTAC Hub v1 hg19
PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF hg19, hg38, mm10
LIBD Human DLPFC Development RNAseq data across human brain development by age group from LIBD hg19
GRC Genome Issues under Review Sanger Genome Reference Informatics Team: Genome issues and other features hg38, hg19, mm10, mm9, danRer7, danRer10
rfam12_ncRNA Rfam 12.0 non-coding RNA annotation [+] hg38, mm10, ce10, galGal4, ci2, danRer7...
C_elegans_isolates C. elegans wild isolate assembly hub [+] CB4856Princeton_JR-contig...
Vista Enhancers Vista Browser Track Hub hg19, mm9, mm10
UCD Methylation ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6...
Porcine DNA methylation and gene transcription DNA methylation and gene expression levels for eight tissues from susScr3
No Unlisted Track Hubs
Contact genome@soe.ucsc.edu to add a public hub.